If it was my bag I would dunk it in Dawn dish soap and a big splash of white vinegar. You might want to use an eraser or suede brush to remove as much of the ink on the suede on the inside of the bag as you can before dunking, so that it doesn't seep through to the outside leather.
After the dunk I would condition and reshape as usual, then carefully use a hairdryer on the inside flap to see if it can be smoothed out. I've had good results with my Geometric Clutch, Bella Court and Casey which also had some wrinkles on the leather lining of the flap.

Most of us use Leather CPR and I always begin while the bag is still wet. I find it really sucks in the conditioner as it is drying. I've never tried Apple products so I'm afraid I can't comment on them.
Good luck and keep us posted!