I've had the same experience - I wanted to make a special request and was asked to put it in the comment box. So...whether the comment box was originally intended for special requests or not, it has been used that way at the direction of BE staff. As sandysandiego said, if there's a box and there's something in it, the request should be taken care of -- and if it's unclear, the client should be asked for clarification. If there's no box, that does make for less...customizability ( I think I just made up a word), but also less room for error.
I consider BE bags to be of outstanding quality. I have purchased 7 BEs in total - three "off the rack" and four via BEC. All of the stock bags and two of the BEC bags were absolutely perfect. I had minor issues with the other two BECs but both were quickly and kindly resolved to my complete satisfaction. However, I do think that the issues I had should have been discovered by quality control at the atelier or at BE before I received them. It may be easy to overlook a missing zipper pull, for example, but surely one of the five people who inspects the bags should have caught that. And if five people are missing larger issues, such as braided handles instead of rolled, or a different-colored lining, there's a breakdown in the quality-checking process somewhere. Perhaps a short QA checklist would be helpful?
You are right, we have given permission to use the Comments Box. That's one of the things I'm trying to figure out. I love maximum flexibility in everything I do and I think that spills over into this.
You are also correct that your minor issues should have been spotted, but I hold my hands up and say they make mistakes sometimes. I do agree with whoever said it's the way we resolve it that counts if that happens so I'm glad we resolved your issue properly and promptly.
A checklist is a very good idea and they do already have one but clearly it doesn't always work. In any case, from our side, with the new QC checks we've had in place for a while, we haven't had many issues at all so I'm hoping that it continues...